Wisconsin Discovery Portal

Researcher's Profile

Last Name

Beebe 

First Name

David 

Middle Initial

Areas of Research Expertise

* Main focus is cellular scale phenomena from both a physical and biological sciences perspective
* Specifically, engineering cellular scale systems in order to better understand basic cellular processes relevant to cancer and development
* Surface patterning to direct cell growth
* Three-dimensional microenvironments for experiments in cancer biology, specifically mammary gland development
* Botulinum Neurotoxin (BoNT) sensing & 3D microenvironments
* Microfluidic in vitro fertilization
* High-Throughput microfluidics for biological assays
* Modeling and microtechnology to study cell-cell interactions

Web site

David Beebe's University Web Page 

Curriculum Vitae (CV)

 

Current/Active Funding

  • DHHS, PHS, NIH, 2009-2012, Microchannel Cell-Based Assays to Enable Cancer Research
  • DOD, Army, 2009-2012, Arrayed Microchannel-Based Assays for Circulating Turmor Cell Capture, Culture, and Analysis
  • NIH, 2007-2010, Microfluidic Channels for High Density, High Performance Culture Assays
  • Wisconsin Alumni Research Foundation, 2006-2033
  • University of California, DOD, 2006-2009, Microfluidics and Cellular Assays
  • Wisconsin Alumni Research Foundation, 2005-2032
  • NIH, 2004-2009, Study of Progenitor Regulation in Mouse Mammary Gland
  • Wisconsin Alumni Research Foundation, 2004-2010, Romnes Faculty Fellow
  • American Medical Systems, Inc., 2003-2030, Novel Approaches to Drug Delivery

Issued Patent(s)

  • 7,504,069 - Micro device for high resolution delivery and monitoring of stimuli to a biological object, in vitro, granted Mar 2009.
  • 7,470,403 - Microfluidic platform and method of generating a gradient, granted Dec 2008.
  • 7,277,021 - Device and method for alerting a runner when a new pair of running shoes is needed, granted Oct 2007.
  • 7,253,003 - Method for monitoring the environment within a microfluidic device, granted Aug 2007.
  • 7,189,580 - Method of pumping fluid through a microfluidic device, granted Mar 2007.

USPTO Published Applications

  • 20090098659 - Method of patterning particles on an arbitrary substrate and conducting a microfluidic invasion assay, published Apr 2009.
  • 20090098587 - Method for quantifying cell motility and cell migration, published Apr 2009.
  • 20090051716 - Method for controlling communication between multiple access ports in a microfluidic device, published Feb 2009.
  • 20080276718 - Method and device for detecting a material, published Nov 2008.
  • 20080220463 - Method of cell chromatography, published Sep 2008.

Recent Publication(s)

  • "Fundamentals of microfluidic cell culture in controlled microenviornments"

Young EWK, Beebe DJ, Chemical Society Reviews 39 (3): 1036-1048 2010. This tutorial review integrates fundamental principles from cell biology and local microenvironments with cell culture techniques and concepts in microfluidics. Culturing cells in microscale environments requires knowledge of multiple disciplines including physics, biochemistry, and engineering. We discuss basic concepts related to the physical and biochemical microenvironments of the cell, physicochemical properties of that microenvironment, cell culture techniques, and practical knowledge of microfluidic device design and operation. We also discuss the most recent advances in microfluidic cell culture and their implications on the future of the field.

  • "Control of 3-dimensional collagen matrix polymerization for reproducible human mammary fibroblast cell culture in microfluidic devices"

SUng KE, Su G, Beebe DJ et al. Biomaterials 30(27): 5833-4841 September 2009. Interest in constructing a reliable 3-dimensional (3D) collagen culture platform in microfabricated systems is increasing as researchers strive to investigate reciprocal interaction between extracellular matrix (ECM) and cells under various conditions. However, in comparison to conventional 2-dimensional (2D) cell culture research, relatively little work has been reported about the polymerization of collagen type I matrix in microsystems. We, thus, present a study of 3D collagen polymerization to achieve reproducible 3D cell culture in microfluiclic devices.

  • "Biological implications of polydimethylsiloxane-based microfluidic cell culture"

Beebe DJ, Murphy WL, Alarid ET et al. Lab on a Chip 9(15): 2132-2139 2009. Polydimethylsiloxane (PDMS) has become a staple of the microfluidics community by virtue of its simple fabrication process and material attributes, such as gas permeability, optical transparency, and flexibility.

  • "Biological implications of polydimethylsiloxane-based microfluidic cell culture"

Regehr KJ, Domenech M, Koepsel JT, et al., Lab Chip 9 (15): 2132-2139 Aug 2009. Two properties of PDMS were addressed in this study: the leaching of uncured oligomers from the polymer network into microchannel media, and the absorption of small, hydrophobic molecules (i.e. estrogen) from serum-containing media into the polymer bulk. Pubmed/NLM.

Recent Artistic Works

 

Collaboration

  • Intra-University Collaboration: Electrical and Computer Engineering, Pediatrics, Pharmacology, Animal Sciences, Orthopedics and Rehabilitation Medicine, Mechanical Engineering, Biochemistry, Biology & Chemical Engineering
  • Vitae LLC, Kathyrn Haubert
  • Phillips Medical Systems, Krishnakant Nammi
  • University of Illinios at Urbana-Champaign, Veterinary Clinical Medicine
  • Northwestern University, Biomedical Engineering
  • Dankook University (Korea), Biomedical Engineering
  • Shippensburg University, Psychology

Research Tools

  • BrightLine DA/FI/TX-3X-A Triple-Band "Pinkel" Filter Set
  • Acticure
  • Spectrophotometer
  • Goniometer

Research Facilities

  • Microtechnology Medicine Biology Lab
  • UW Carbone Cancer Center
  • Biomedical Engineering Center for Translational Research

E-mail Address

djbeebe@wisc.edu 

Phone Number

(608) 262-2260 

Current University

UW - Madison 

Department

Biomedical Engineering  

Title

Professor 

Other Appointments

Principal Investigator, Microtechnology Medicine Biology Lab
Affiliate Professor, Mechanical Engineering, Materials Science
Faculty Trainer, Biotechnology Training Program, Computation and Informatics in Biology and Medicine (CIBM)
Mentor, Chemistry-Biology Interface Training Program

Address Line 1

3144 Engineering Centers Building 

Address Line 2

1550 Engineering Drive 

City

Madison 

State

WI 

Zip Code

53706 

Bachelor's Degree

BS, University of Wisconsin - Madison, Electrical Engineering

Master's Degree

MS, University of Wisconsin - Madison, Electrical Engineering

PhD

PhD, University of Wisconsin - Madison, Electrical Engineering, 1994

Other Degrees

 

Technologies Available for Licensing

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Attachments
Created at 6/15/2007 9:42 AM  by EXTWEB\tpearce 
Last modified at 5/17/2010 1:05 PM  by EXTWEB\jkolberg